PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000132-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 553aa    MW: 60352.9 Da    PI: 6.8398
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000132-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08370417455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  WALNUT_00000132-RA 370 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 417
                         8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-17364434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.03E-10364421No hitNo description
Gene3DG3DSA:4.10.280.101.0E-16366434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.523366416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-5370417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-9372422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MENEFFQNAG MHFESSASLS SIWHSLSSSA METRGTELNC MSDQSPDCLR NPSWEKSTDH  60
GIHFDSALSS IVSSPAASNT NLSHDSFVIR ELIGKLGNIG NSGDISPHSR PLLASYIGGN  120
NSANTSCYST PLNSPPKPNV PRMDHLIKEN LPSLGKSMPL SSSVAEFSAD PGFAERAAKF  180
SRFASRSFND RTSQFGQNNA EALYRSNLLV ETESLSRVSS SPSLKAVGSQ MRGQENYSSP  240
MQDRTELASS QEESTISEQI PDVETGLKGS NDLNPRKRKT ASKGKAKEPK SSPFANSTKV  300
AEANGNSNAK RCKPNETNGK ENGLVKAEEE AKGSSSSSGD EKQSKTNTKP PEPPKDYIHV  360
RARRGQATDS HSLAERVRRE KISERMKFLQ DLVPGCNKVT GKALMLDEII NYVQSLQRQV  420
EFLSMKLSSV NTRLDLNMDT LISKDIFQSS NPLPHAIFRL DSRASAFYAH QAQQDPALHS  480
NISNGTATQC SVDPLDTALC QSLSVQLPPL NGYRESVSQF PMFGEDDLQT IVQMGFGQNP  540
SQETAMQPQS FHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892293.10.0PREDICTED: transcription factor bHLH62
TrEMBLA0A061DLW80.0A0A061DLW8_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGPOPTR_0002s24990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-102bHLH family protein